Structure Class MODEL
Package:
CL-SBML
Class Precedence List:
MODEL, SBML-ELEMENT, SBML-BASE, STRUCTURE-CLASS, T.
Slots:
- FUNCTION-DEFINITIONS: default value (), type LIST, initarg :FUNCTION-DEFINITIONS
- UNIT-DEFINITIONS: default value (), type LIST, initarg :UNIT-DEFINITIONS
- COMPARTMENTS: default value (), type LIST, initarg :COMPARTMENTS
- SPECIES: default value (), type LIST, initarg :SPECIES
- PARAMETERS: default value (), type LIST, initarg :PARAMETERS
- RULES: default value (), type LIST, initarg :RULES
- REACTIONS: default value (), type LIST, initarg :REACTIONS
- EVENTS: default value (), type LIST, initarg :EVENTS
Description:
The main element type in a SBML document. Each model groups all the defining characteristics of a given biochemical system.
The accessors MODEL-FUNCTION-DEFINITIONS, MODEL-UNIT-DEFINITIONS, MODEL-COMPARTMENTS, MODEL-SPECIES, MODEL-PARAMETERS, MODEL-RULES, MODEL-REACTIONS, and MODEL-EVENTS are used to extract and set the structure fields.
Affected By:
None.
Exceptional Situations:
None.
See Also:
SBML-ELEMENT, MODEL-P,MODEL-FUNCTION-DEFINITIONS, MODEL-UNIT-DEFINITIONS, MODEL-COMPARTMENTS, MODEL-SPECIES, MODEL-PARAMETERS, MODEL-RULES, MODEL-REACTIONS, MODEL-EVENTS, MODEL-ID, MODEL-NAME, and MAKE-MODEL.
Notes:
SBML must resort to "container elements"
like listOfCompartments, listOfParameters
etc. etc. These are directly represented as LISTs
in CL.
If the need arises, these lists could be replaced with VECTORs.