CL-SBML: Structure Class MODEL
 

Structure Class MODEL

Package:

CL-SBML

Class Precedence List:

MODEL, SBML-ELEMENT, SBML-BASE, STRUCTURE-CLASS, T.

Slots:

  • FUNCTION-DEFINITIONS: default value (), type LIST, initarg :FUNCTION-DEFINITIONS
  • UNIT-DEFINITIONS: default value (), type LIST, initarg :UNIT-DEFINITIONS
  • COMPARTMENTS: default value (), type LIST, initarg :COMPARTMENTS
  • SPECIES: default value (), type LIST, initarg :SPECIES
  • PARAMETERS: default value (), type LIST, initarg :PARAMETERS
  • RULES: default value (), type LIST, initarg :RULES
  • REACTIONS: default value (), type LIST, initarg :REACTIONS
  • EVENTS: default value (), type LIST, initarg :EVENTS

Description:

The main element type in a SBML document. Each model groups all the defining characteristics of a given biochemical system.

The accessors MODEL-FUNCTION-DEFINITIONS, MODEL-UNIT-DEFINITIONS, MODEL-COMPARTMENTS, MODEL-SPECIES, MODEL-PARAMETERS, MODEL-RULES, MODEL-REACTIONS, and MODEL-EVENTS are used to extract and set the structure fields.

Affected By:

None.

Exceptional Situations:

None.

See Also:

SBML-ELEMENT, MODEL-P,MODEL-FUNCTION-DEFINITIONS, MODEL-UNIT-DEFINITIONS, MODEL-COMPARTMENTS, MODEL-SPECIES, MODEL-PARAMETERS, MODEL-RULES, MODEL-REACTIONS, MODEL-EVENTS, MODEL-ID, MODEL-NAME, and MAKE-MODEL.

Notes:

SBML must resort to "container elements" like listOfCompartments, listOfParameters etc. etc. These are directly represented as LISTs in CL.

If the need arises, these lists could be replaced with VECTORs.

 

News

News in chronological order, most recent on top.

  • 2005-05-04
    Completed description.