CL-SBML: Structure Class SPECIES-REFERENCE
 

Structure Class SPECIES-REFERENCE

Package:

CL-SBML

Class Precedence List:

SPECIES-REFERENCE, SIMPLE-SPECIES-REFERENCE, SBML-BASE, STRUCTURE-CLASS, T.

Slots:

  • STOICHIOMETRY: default value 1.0d0, type DOUBLE-FLOAT, initarg :STOICHIOMETRY
  • STOICHIOMETRY-MATH: default value NIL, type (OR NULL CONS STOICHIOMETRY-MATH), initarg :STOICHIOMETRY-MATH

Description:

The instances of this structure class represent SBML species reference definitions.

Every species that enters into a given reaction must appear in that reaction's lists of reactants, products or modifiers. In an SBML model, all species that participate in any reaction are listed in the MODEL-SPECIES field of the top-level MODEL data structure. Lists of products, reactants and modifiers in REACTION structures do not introduce new species, but rather, they refer back to those listed in the model's MODEL-SPECIES list. For reactants and products, the connection is made using the SPECIES-REFERENCE data structure.

The accessors SPECIES-REFERENCE-STOICHIOMETRY, and SPECIES-REFERENCE-STOICHIOMETRY-MATH can be used to extract and set the structure fields.

Affected By:

None.

Exceptional Situations:

None.

See Also:

SBML-BASE, SIMPLE-SPECIES-REFERENCE, STOICHIOMETRY-MATH, SPECIES-REFERENCE-STOICHIOMETRY, SPECIES-REFERENCE-STOICHIOMETRY-MATH, SPECIES-REFERENCE-P, and MAKE-SPECIES-REFERENCE.

Notes:

None.

 

News

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  • 2005-05-09
    Completed description.